1 00:00:01,418 --> 00:00:04,337 This presentation has been supported by the Erasmus 2 00:00:04,337 --> 00:00:07,298 Plus K2 Cooperation Partnerships. 3 00:00:07,757 --> 00:00:12,012 Innovation of the structure and content of study programs in the field of animal 4 00:00:12,012 --> 00:00:16,516 genetic and food resources management 5 00:00:16,516 --> 00:00:17,100 with the use of digitalization innovation. 6 00:00:17,100 --> 00:00:21,563 Support for the production 7 00:00:21,730 --> 00:00:27,110 of this presentation 8 00:00:27,110 --> 00:00:30,488 does not constitute 9 00:00:30,488 --> 00:00:34,451 an endorsement of the contents, which reflects the views only of the authors. 10 00:00:34,784 --> 00:00:38,663 And the Commission cannot be held responsible for any use which may be made 11 00:00:38,663 --> 00:00:42,333 of the information 12 00:00:44,419 --> 00:00:45,378 contained 13 00:00:47,464 --> 00:00:48,423 therein. 14 00:00:49,174 --> 00:00:50,675 This presentation 15 00:00:51,176 --> 00:00:53,887 has been created by Stanislav 16 00:00:53,887 --> 00:00:57,599 Socha, University of Siedlce. 17 00:00:59,726 --> 00:01:01,311 This lecture will be concerning 18 00:01:01,311 --> 00:01:05,190 genetic parameters, repeatability and genetic correlations 19 00:01:06,816 --> 00:01:10,111 Modul no. 3: Improvement of Animals 20 00:01:11,029 --> 00:01:12,280 The genetic parameters 21 00:01:12,280 --> 00:01:17,827 of the population include heritability of features, repeatability of features and correlations, 22 00:01:18,119 --> 00:01:21,873 including genetic phenotypic and environmental correlations. 23 00:01:22,832 --> 00:01:24,667 Further, 24 00:01:26,920 --> 00:01:28,421 characteristics important 25 00:01:28,421 --> 00:01:32,675 in animal husbandry include performance of animals. 26 00:01:32,675 --> 00:01:37,180 For example, milk yield, animal reproduction and health. 27 00:01:38,098 --> 00:01:41,476 Generally, the features can be classified into two groups. 28 00:01:41,768 --> 00:01:44,687 Quality features and quantitative characteristics. 29 00:01:45,522 --> 00:01:49,067 The main factor 30 00:01:49,859 --> 00:01:52,153 differentiating these two 31 00:01:52,153 --> 00:01:57,158 groups of traits is the number of pairs of alleles genes affecting their formation 32 00:01:57,158 --> 00:02:00,120 and the number of classes of differentiated phenotypes. 33 00:02:00,995 --> 00:02:03,206 In the case of qualitative traits. 34 00:02:03,206 --> 00:02:06,501 The number of pairs genes or a series of alleles 35 00:02:06,751 --> 00:02:09,546 influencing their formation is limited, ranging 36 00:02:09,546 --> 00:02:11,714 from one to a maximum of 2 to 4. 37 00:02:12,590 --> 00:02:15,510 This, in turn affects a limited number of genotypes. 38 00:02:15,760 --> 00:02:22,016 Hereditary assumptions of individuals and consequently individuals with specific phenotypes. 39 00:02:22,142 --> 00:02:24,394 Total characteristics of the organism. 40 00:02:25,770 --> 00:02:27,939 41 00:02:27,939 --> 00:02:30,316 42 00:02:33,027 --> 00:02:34,237 In the case of features 43 00:02:34,237 --> 00:02:38,074 defined as quantitative, the situation is much more complex. 44 00:02:38,992 --> 00:02:41,828 Firstly, the number of genes polygens 45 00:02:41,828 --> 00:02:46,082 affecting their shape is very numerous, sometimes difficult to determine. 46 00:02:46,958 --> 00:02:49,544 Then, in addition to genetic assumptions, 47 00:02:49,711 --> 00:02:53,506 environmental factors have a significant impact on their formation. 48 00:02:54,382 --> 00:02:59,220 This type of inheritance significantly increases the diversity of individuals in the herd 49 00:02:59,220 --> 00:03:02,265 and makes it extremely difficult to identify genotypes 50 00:03:02,265 --> 00:03:04,642 based on phenotype. 51 00:03:05,268 --> 00:03:06,186 52 00:03:06,186 --> 00:03:11,232 53 00:03:11,232 --> 00:03:14,652 54 00:03:14,652 --> 00:03:17,572 With the multiplicity of factors influencing traits 55 00:03:17,864 --> 00:03:23,494 it is impossible to determine the contribution of a single gene to the formation of a quantitative trait. 56 00:03:23,620 --> 00:03:29,542 Only statistical methods allow to determine the influence of genotype and environment on the variability 57 00:03:29,542 --> 00:03:34,380 of the trait in the herd, and to estimate the heritability of the traits of interest on this basis. 58 00:03:36,216 --> 00:03:39,594 And if 59 00:03:39,594 --> 00:03:42,305 each heritability H2 60 00:03:42,555 --> 00:03:45,141 informs us in a very general sense 61 00:03:45,433 --> 00:03:49,145 about what part of the general phenotypic variation of a given trait in 62 00:03:49,145 --> 00:03:53,983 the population is genetic variation diversity caused by the action of genes. 63 00:03:54,192 --> 00:03:58,780 Heritability also determines how much of the selection difference will be transferred 64 00:03:58,780 --> 00:04:01,366 to the offspring in the form of breeding progress. 65 00:04:02,283 --> 00:04:04,410 The heritability of traits is measured 66 00:04:04,410 --> 00:04:07,121 by the heritability coefficient h two. 67 00:04:07,997 --> 00:04:11,918 It is the ratio of genetic variation to phenotypic variation. 68 00:04:12,085 --> 00:04:14,087 We can express this with the formula 69 00:04:17,131 --> 00:04:20,009 70 00:04:20,009 --> 00:04:25,181 H two equals delta two G slash delta 2P 71 00:04:26,015 --> 00:04:30,561 where Delta 2P equals delta 2G plus delta 2E. 72 00:04:30,561 --> 00:04:34,482 Were delta 2P - phenotypic variability, 73 00:04:34,691 --> 00:04:37,944 total variable ity of a given trait in a herd population. 74 00:04:38,111 --> 00:04:43,241 Delta 2G - genetic variation, delta 2E - environmental variability 75 00:04:45,410 --> 00:04:46,744 Discover 76 00:04:49,330 --> 00:04:53,376 ratio of genetic variation to overall phenotypic variation. 77 00:04:53,793 --> 00:04:57,547 The degree of influence of the variability of the hereditary assumptions 78 00:04:57,547 --> 00:05:01,259 of a given trait on the manifestation of variability in the phenotype. 79 00:05:02,677 --> 00:05:06,389 The regression coefficient of the breeding value against the phenotypic 80 00:05:06,389 --> 00:05:09,726 value of the same individual (refers to the population) 81 00:05:11,352 --> 00:05:11,978 After 82 00:05:13,730 --> 00:05:14,856 a note, 83 00:05:14,856 --> 00:05:18,651 it makes it possible to determine to what extent the observed phenotypic 84 00:05:18,651 --> 00:05:21,321 variability results from genetic variability 85 00:05:23,865 --> 00:05:26,701 determines the regression of G against P allows 86 00:05:26,701 --> 00:05:30,663 to predict 87 00:05:30,788 --> 00:05:32,832 estimate the breeding value. 88 00:05:32,832 --> 00:05:36,711 Allows you to predict the effectiveness of selection 89 00:05:38,504 --> 00:05:38,963 because 90 00:05:41,841 --> 00:05:45,011 h to the symbol derived from the analysis of variance 91 00:05:45,011 --> 00:05:48,556 refers to the mean square of deviations of some of its components. 92 00:05:48,765 --> 00:05:51,976 H to correlation between genotype and phenotype. 93 00:05:52,810 --> 00:05:56,356 But again, that this is not the problem, the more we divide 94 00:05:56,564 --> 00:06:02,612 Analysis of variance, we estimate the mean and variance 95 00:06:02,612 --> 00:06:08,159 for the whole population. 96 00:06:08,326 --> 00:06:10,787 for all groups of half siblings. 97 00:06:10,995 --> 00:06:13,164 for all sibling groups. 98 00:06:14,916 --> 00:06:16,626 We rely on analysis of 99 00:06:16,626 --> 00:06:19,462 Half sibling groups. 100 00:06:19,712 --> 00:06:22,215 Cattle, sheep, 101 00:06:23,800 --> 00:06:25,843 and full sibling groups. 102 00:06:25,843 --> 00:06:27,387 Poultry, pigs. 103 00:06:27,387 --> 00:06:31,015 We calculate on the basis of intraclass correlation coefficients 104 00:06:31,808 --> 00:06:37,230 analysis of full sibling groups 105 00:06:38,398 --> 00:06:39,399 h2 → population parameter 106 00:06:42,485 --> 00:06:44,904 Varied depending on the characteristics. 107 00:06:45,113 --> 00:06:48,699 Varied depending on time in the same populations. 108 00:06:48,908 --> 00:06:51,411 Varied depending on the population. 109 00:06:51,661 --> 00:06:54,789 For the same features H2 from 0 to 1 110 00:06:54,789 --> 00:06:57,708 or from 0 to 100.00%. 111 00:07:00,128 --> 00:07:00,628 Group 112 00:07:01,838 --> 00:07:04,215 The repetition of traits 113 00:07:04,215 --> 00:07:06,968 is one of the genetic parameters of a population. 114 00:07:07,885 --> 00:07:12,890 The repeatability of traits can be estimated for traits that are cyclically repeated in animals. 115 00:07:13,099 --> 00:07:18,146 For example, the number of young in successive litters, body weight of successive litters, 116 00:07:18,396 --> 00:07:23,067 the amount of milk obtained from cows and other mammals in successive lactation 117 00:07:23,985 --> 00:07:26,279 When estimating the repeatability index. 118 00:07:26,487 --> 00:07:31,117 We assume that the genotype of animals does not change over the course of their lives 119 00:07:31,284 --> 00:07:34,454 and the differences that arise in subsequent years of use 120 00:07:34,454 --> 00:07:36,664 result from environmental influences. 121 00:07:37,540 --> 00:07:40,626 They can also result from the somatic development of animals. 122 00:07:41,544 --> 00:07:47,216 Estimating the repeatability index 123 00:07:47,216 --> 00:07:48,217 (r’, R): P = H + EES + EEN 124 00:07:48,217 --> 00:07:53,264 OR σ2p = σ2g + σ2Es + σ2En 125 00:07:54,140 --> 00:07:56,767 σ2p - phenotypic variability 126 00:07:56,976 --> 00:08:00,646 σ2g – genetic variability 127 00:08:00,855 --> 00:08:04,025 σ2Es – constant environmental variability, 128 00:08:04,192 --> 00:08:06,277 σ2En – variable environmental variability. 129 00:08:07,153 --> 00:08:09,780 regression method of posterior performances, 130 00:08:10,656 --> 00:08:12,825 regression method of later performances 131 00:08:12,825 --> 00:08:16,454 to earlier performances 132 00:08:20,041 --> 00:08:20,708 Estimating the repeatability index 133 00:08:20,708 --> 00:08:22,710 (r’, R): 134 00:08:24,420 --> 00:08:29,258 P = H + EES + EEN OR 135 00:08:29,300 --> 00:08:32,136 σ2p = σ2g + σ2Es + σ2En 136 00:08:33,054 --> 00:08:35,723 σ2p - phenotypic variability 137 00:08:35,890 --> 00:08:39,602 σ2g – genetic variability 138 00:08:39,852 --> 00:08:41,896 σ2Es – constant environmental variability 139 00:08:42,021 --> 00:08:45,191 σ2En – variable environmental variability. 140 00:08:46,108 --> 00:08:50,321 r’ = (σ2g + σ2Es)/(σ2g + σ2Es + σ2En) 141 00:08:50,530 --> 00:08:53,908 The method of regression 142 00:08:54,116 --> 00:08:57,995 of later performances to earlier performances. 143 00:08:58,120 --> 00:09:01,791 Variance analysis Method Selected values 144 00:09:01,791 --> 00:09:04,001 of estimated repeatability ratios. 145 00:09:04,961 --> 00:09:06,546 number of piglets in pigs. 146 00:09:06,546 --> 00:09:09,215 0.1 - 0.15 147 00:09:09,465 --> 00:09:11,050 Number of young in rabbits. 148 00:09:11,050 --> 00:09:14,095 0.09 - 0.12 149 00:09:14,262 --> 00:09:18,182 number of young in chinchillas 0.12 - 15. 150 00:09:18,391 --> 00:09:24,105 repeatability of milk yield 151 00:09:25,690 --> 00:09:28,985 in cattle 0.25 - 0.35 152 00:09:28,985 --> 00:09:31,946 Correlations result from linkage 153 00:09:31,946 --> 00:09:36,075 of genes - conditioning individual traits are on the same chromosomes. 154 00:09:36,284 --> 00:09:41,789 Selection of two features in the same direction, which in turn leads to the occurrence of interdependence. 155 00:09:41,956 --> 00:09:47,628 Pleiotropic influence of individual genes on various traits 156 00:09:49,297 --> 00:09:52,717 With low heritability of traits 157 00:09:52,883 --> 00:09:59,640 the value of the phenotypic correlation is close to the environmental correlation. With high heritability, 158 00:09:59,682 --> 00:10:03,185 the phenotypic correlation will be close to the genetic correlation. 159 00:10:04,061 --> 00:10:06,522 In the case of medium sized heritability, 160 00:10:06,647 --> 00:10:09,400 or when one trait has a high and the other a low 161 00:10:09,609 --> 00:10:12,695 the genetic correlation and may be positive and the phenotypic 162 00:10:12,695 --> 00:10:14,864 correlation negative. 163 00:10:15,948 --> 00:10:17,325 VALUES OF SOME PARAMETERS IN ANIMAL HERDS - HERITABILITY 164 00:10:17,658 --> 00:10:21,245 Cattle: milk yield 0.31 0.39 165 00:10:21,495 --> 00:10:25,750 Fat content 0.56 - 0.68, 166 00:10:25,750 --> 00:10:29,462 Milk Protein 167 00:10:29,754 --> 00:10:33,382 content about 0.57. 168 00:10:33,382 --> 00:10:36,677 Body weight at birth about 0.40. 169 00:10:36,761 --> 00:10:44,018 Body weight at the age of 120 days, about 0.50 daily gain of about 0.40. 170 00:10:44,268 --> 00:10:47,438 Slaughter efficiency of about 0.60. 171 00:10:47,647 --> 00:10:50,608 Height of the withers about 0.542. 172 00:10:50,775 --> 00:10:53,319 Carcass length about 0.75. 173 00:10:53,319 --> 00:10:58,032 For area of the eye of the tenderloin about 0.178. 174 00:10:58,783 --> 00:10:59,659 175 00:11:01,077 --> 00:11:03,162 Pigs: 176 00:11:03,162 --> 00:11:05,790 Daily gain 0.30. 177 00:11:05,915 --> 00:11:09,919 Average daily gain 4290 kilograms 0.26 178 00:11:09,919 --> 00:11:13,839 for fat thickness on the back about 0.50. 179 00:11:13,881 --> 00:11:16,717 Length of the carcass about 0.50. 180 00:11:16,884 --> 00:11:18,636 Amount of meat in basic cuts 181 00:11:18,636 --> 00:11:20,680 about 0.520. 182 00:11:20,846 --> 00:11:25,267 Area of the eye of the tenderloin about 0.740. 183 00:11:25,434 --> 00:11:29,230 Lighter weight three weeks approximate 0.080 184 00:11:29,480 --> 00:11:32,817 litter size at birth is about 0.10. 185 00:11:34,860 --> 00:11:40,950 Sheep: body weight at birth 0.30. 186 00:11:41,075 --> 00:11:44,412 Body weight after weaning 0.30. 187 00:11:44,578 --> 00:11:47,540 Body weight ten months 0.28. 188 00:11:47,790 --> 00:11:51,210 Shearing Pure fiber Efficiency 0.28. 189 00:11:51,460 --> 00:11:54,046 Wool thickness 0.40. 190 00:11:54,255 --> 00:11:57,800 Human Mass 0.40 000. 191 00:11:58,718 --> 00:12:01,137 Wool Height 0.52. 192 00:12:01,262 --> 00:12:03,597 Milk Yield 0.18. 193 00:12:03,848 --> 00:12:07,226 Fleece weight of the second shearer 0.32. 194 00:12:07,518 --> 00:12:10,229 Poultry: 195 00:12:12,398 --> 00:12:15,109 egg size 0.45. 196 00:12:15,359 --> 00:12:17,737 Egg weight 0.30. 197 00:12:17,945 --> 00:12:20,781 Laying capacity 0.20. 198 00:12:20,948 --> 00:12:23,617 Shell Color 0.70. 199 00:12:23,743 --> 00:12:26,203 Fertility 0.10. 200 00:12:26,328 --> 00:12:29,123 Feed Efficiency 0.60. 201 00:12:29,290 --> 00:12:33,919 Body weight eight weeks 0.10 - 0.30 202 00:12:34,837 --> 00:12:39,300 Stroke Length 0.10 - 0.30 203 00:12:44,472 --> 00:12:46,265 Cattle correlations 204 00:12:46,265 --> 00:12:50,686 with milk yield fat content in milk dash zero 41 205 00:12:50,895 --> 00:12:54,106 phenotypic 0.43 Genetic 206 00:12:55,065 --> 00:12:57,860 fat content Protein content in milk 207 00:12:57,860 --> 00:13:02,198 0.57 phenotypic 0.60. 208 00:13:02,198 --> 00:13:06,035 Genetic weight at birth at the age of one year. 209 00:13:06,076 --> 00:13:10,414 0.34 phenotypic 0.40. 210 00:13:10,414 --> 00:13:16,962 Genetic trunk length body weight 0.70 phenotypic 0.83. 211 00:13:16,962 --> 00:13:20,883 Genetic Poultry Body weight Egg weight 212 00:13:20,883 --> 00:13:25,095 0.30 phenotypic 0.25. 213 00:13:25,262 --> 00:13:28,390 Genetic body weight Breast Angle 214 00:13:28,390 --> 00:13:32,394 0.38 phenotypic 0.68. 215 00:13:32,520 --> 00:13:35,773 Genetic body weight Stroke Length 216 00:13:35,773 --> 00:13:41,654 0.4120.74 phenotypic 0.832. 217 00:13:41,654 --> 00:13:43,781 0.89. Genetic. 218 00:13:44,657 --> 00:13:47,660 Pigs daily gain back fat thickness 219 00:13:47,660 --> 00:13:52,748 -0.10 phenotypic -0.20. 220 00:13:52,748 --> 00:13:58,337 Genetic body length Back fat thickness -0.30 221 00:13:58,546 --> 00:14:01,549 phenotypic -0.40. 222 00:14:01,590 --> 00:14:02,591 Genetic. 223 00:14:07,221 --> 00:14:08,556 Thank you for your attention.